PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_B65714572.1
Common NameWRKY1A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 293aa    MW: 31118.6 Da    PI: 6.732
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_B65714572.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY893.9e-28119179259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                            dDg++WrKYGqK++ g+++pr+YYrCt++   gCp++k+v+r+++dp +++++Y+g+H+++
  Traes_2BS_B65714572.1 119 DDGHSWRKYGQKDILGAKHPRAYYRCTHRnsqGCPATKQVQRADQDPALFDVVYHGQHTCR 179
                            7***************************98889**************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.423113176IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-28114179IPR003657WRKY domain
SuperFamilySSF1182903.66E-25117179IPR003657WRKY domain
SMARTSM007743.0E-39118180IPR003657WRKY domain
PfamPF031061.7E-27119179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MESVEGNGTG RGNLQLVVSE LCRVQELVRQ LELHLHAPDA SIDLCRALTA EIFALTDRSI  60
GFVAAHFPDA PTTPSSTSSS LSGVSDQPFR TNTKKRKATA RWTSQVRVSA AGGAEGPGDD  120
GHSWRKYGQK DILGAKHPRA YYRCTHRNSQ GCPATKQVQR ADQDPALFDV VYHGQHTCRP  180
TGSGGGRRPP TNQHNPHAES LLQSLRAGLT VDADHGGPNA SVSPLGASPV ASGSNGGLTM  240
SPYPVPAGAY TEWPLDGDLQ EVVSALTAVS APSMDCLFEF DPTFGDGVPN FFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-131191761569WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3344000.0DQ334400.1 Triticum aestivum WRKY transcription factor WRKY1A (WRKY1A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574419.11e-121PREDICTED: probable WRKY transcription factor 53
TrEMBLA7X9Y30.0A7X9Y3_WHEAT; Uncharacterized protein
STRINGBRADI3G34850.11e-121(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-37WRKY family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]